PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11934_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 383aa    MW: 42829.1 Da    PI: 10.2115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11934_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000543250523
                 TTTEEESSHHHHHHHHHHT CS
      zf-C2H2  5 dCgksFsrksnLkrHirtH 23
                 +C+k F+r  nL+ H r H
  RrC11934_p1 32 ICNKGFKRDQNLQLHRRGH 50
                 7****************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.13E-53250No hitNo description
Gene3DG3DSA:3.30.160.602.8E-493126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.13E-5100125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
TSYTKNPSPR ILALTLILPP QTQTKGKEIS RICNKGFKRD QNLQLHRRGH NLPWKLKQRT  60
DKEQVKKKVY VCPEKTCVHH DPSRALGDLT GIKKHFSRKH GEKKWKCEKC SKKYAVMSDW  120
KAHSKICGTR EYRCDCGTLF SRAFCDALAE ESARFASVPP AAVACLNNAS DAEVNLGNIK  180
PNHQQRLPDR TSSQHDQHGF NINHDNINGF TRQSSTNQLP LAANVFASSS SSSLSPSPHS  240
ASALLQNLWQ LQGRQSYQWL LNENNNNIIH SGMPNNQEDY DTKKGISLGS NLFSSEARTN  300
YNQNGGQEMG SMSATALLQR ATQMGSKRSS SSSNSGMAFG LMTSSIFNNK EMENNIKTKE  360
VDERGFTRDF LGVASQNRPR PIL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528221e-129AK352822.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-07-P14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150085.10.0PREDICTED: zinc finger protein JACKDAW isoform X2
SwissprotQ944L31e-157IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLA0A078IV730.0A0A078IV73_BRANA; BnaA06g38780D protein
STRINGBra038293.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-143C2H2-like zinc finger protein